Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1234346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1234348	0.88[ASN][1000 genomes]
rs1234351	0.81[ASN][1000 genomes]
rs1234352	0.81[ASN][1000 genomes]
rs1623536	0.94[ASN][1000 genomes]
rs2079530	0.92[ASN][1000 genomes]
rs2097672	0.85[ASN][1000 genomes]
rs2188547	0.83[ASN][1000 genomes]
rs2860402	0.85[ASN][1000 genomes]
rs28844	0.82[ASN][1000 genomes]
rs2905278	0.85[ASN][1000 genomes]
rs2952678	0.82[ASN][1000 genomes]
rs3095054	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3111433	0.83[AFR][1000 genomes]
rs3111438	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3111448	0.81[EUR][1000 genomes]
rs3111459	0.88[EUR][1000 genomes]
rs3128399	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3128413	0.87[EUR][1000 genomes]
rs3128414	0.88[EUR][1000 genomes]
rs3128415	0.86[EUR][1000 genomes]
rs4473967	0.91[ASN][1000 genomes]
rs4518580	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112207400-112216400	Weak transcription	Psoas Muscle	Psoas
2	chr7:112211800-112216800	Enhancers	Fetal Heart	heart
3	chr7:112212400-112216400	Weak transcription	Left Ventricle	heart
4	chr7:112213200-112220000	Weak transcription	Right Ventricle	heart
5	chr7:112214000-112221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:112214200-112216400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr7:112214600-112216800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:112214600-112217000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr7:112215600-112216600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:112215600-112217000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:112215800-112216400	Enhancers	HepG2	liver
12	chr7:112215800-112216800	Weak transcription	Stomach Mucosa	stomach
13	chr7:112216000-112216400	Enhancers	HMEC	breast
14	chr7:112216200-112216400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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