Variant report

Variant	rs3111448
Chromosome Location	chr7:112196775-112196776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112186668..112189403-chr7:112196363..112199344,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1234346	0.81[EUR][1000 genomes]
rs1236840	0.81[EUR][1000 genomes]
rs12665935	0.87[ASN][1000 genomes]
rs13232491	0.87[ASN][1000 genomes]
rs1859882	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971656	0.92[ASN][1000 genomes]
rs2906789	0.87[CEU][hapmap]
rs2966475	0.96[CEU][hapmap]
rs3095042	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3095043	0.89[YRI][hapmap]
rs3095044	0.81[EUR][1000 genomes]
rs3095045	0.81[EUR][1000 genomes]
rs3095046	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3095047	0.83[EUR][1000 genomes]
rs3095048	0.84[EUR][1000 genomes]
rs3095049	0.81[EUR][1000 genomes]
rs3095051	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3095053	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095054	0.82[EUR][1000 genomes]
rs3095057	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3111451	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111452	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3111458	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3111459	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128399	0.86[EUR][1000 genomes]
rs3128411	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128413	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3128414	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3128415	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3128420	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3128422	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3128423	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3128424	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3128425	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes]
rs3128426	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs725312	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs978541	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv971209	chr7:112189312-112201673	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112196200-112196800	Enhancers	HMEC	breast
2	chr7:112196200-112197000	Enhancers	Primary T cells from cord blood	blood
3	chr7:112196200-112197000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:112196400-112196800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:112196400-112197000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:112196400-112197000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:112196400-112197000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:112196400-112197000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:112196400-112197000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:112196400-112197600	Enhancers	Fetal Thymus	thymus
11	chr7:112196600-112196800	Enhancers	Thymus	Thymus
12	chr7:112196600-112197000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:112196600-112197800	Enhancers	Primary T cells fromperipheralblood	blood

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