Variant report

Variant	rs1971656
Chromosome Location	chr7:112205836-112205837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1234348	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1234351	0.90[CEU][hapmap]
rs12665935	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13232491	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1859882	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2079530	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2952678	0.80[CEU][hapmap]
rs2952687	0.80[CEU][hapmap]
rs2952688	0.80[CEU][hapmap]
rs3095042	0.90[CHB][hapmap]
rs3095057	0.88[ASN][1000 genomes]
rs3111448	0.92[ASN][1000 genomes]
rs3111451	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs3128411	0.92[ASN][1000 genomes]
rs3128424	0.91[CHB][hapmap]
rs3128425	1.00[CHB][hapmap]
rs4473967	0.85[EUR][1000 genomes]
rs4518580	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112205600-112207800	Enhancers	Fetal Heart	heart
2	chr7:112205800-112206800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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