Variant report

Variant	rs3095057
Chromosome Location	chr7:112192789-112192790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112192318..112194572-chr7:112430024..112431816,2	K562	blood:

Variant related genes	Relation type
ENSG00000146802	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12665935	0.83[ASN][1000 genomes]
rs13232491	0.83[ASN][1000 genomes]
rs1859882	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1971656	0.88[ASN][1000 genomes]
rs3095042	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3095044	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3095045	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3095046	0.89[AMR][1000 genomes]
rs3095047	0.82[AMR][1000 genomes]
rs3095049	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3095051	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3095053	0.80[EUR][1000 genomes]
rs3095054	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3111448	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3111451	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3111452	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3111458	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3111459	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128399	0.82[EUR][1000 genomes]
rs3128411	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3128413	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128414	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3128415	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3128420	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3128422	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3128423	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3128424	0.91[AMR][1000 genomes]
rs3128425	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3128426	0.91[AMR][1000 genomes]
rs725312	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs978541	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv971209	chr7:112189312-112201673	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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