Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112186668..112189403-chr7:112196363..112199344,2	MCF-7	breast:
2	chr7:112188001..112190741-chr7:112193794..112196488,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10236486	0.82[AMR][1000 genomes]
rs1234351	0.81[AMR][1000 genomes]
rs12666832	0.85[AMR][1000 genomes]
rs13232491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232911	0.86[AMR][1000 genomes]
rs17159738	0.90[AMR][1000 genomes]
rs1859882	0.87[ASN][1000 genomes]
rs1971656	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2097672	0.81[AMR][1000 genomes]
rs2396550	0.82[AMR][1000 genomes]
rs2860402	0.81[AMR][1000 genomes]
rs28844	0.80[AMR][1000 genomes]
rs2952678	0.80[AMR][1000 genomes]
rs3095030	0.82[AMR][1000 genomes]
rs3095031	0.82[AMR][1000 genomes]
rs3095033	0.82[AMR][1000 genomes]
rs3095034	0.82[AMR][1000 genomes]
rs3095057	0.83[ASN][1000 genomes]
rs3111448	0.87[ASN][1000 genomes]
rs3111451	0.87[ASN][1000 genomes]
rs3128377	0.82[AMR][1000 genomes]
rs3128378	0.82[AMR][1000 genomes]
rs3128411	0.87[ASN][1000 genomes]
rs34669443	0.86[AMR][1000 genomes]
rs35066127	0.85[AMR][1000 genomes]
rs35207322	0.85[AMR][1000 genomes]
rs4518580	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv971209	chr7:112189312-112201673	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112196200-112196800	Enhancers	HMEC	breast
2	chr7:112196200-112197000	Enhancers	Primary T cells from cord blood	blood
3	chr7:112196200-112197000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:112196400-112196800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:112196400-112197000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:112196400-112197000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:112196400-112197000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:112196400-112197000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:112196400-112197000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:112196400-112197600	Enhancers	Fetal Thymus	thymus

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