Variant report

Variant	rs13232911
Chromosome Location	chr7:112145249-112145250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112089202..112092947-chr7:112141836..112146688,6	K562	blood:
2	chr7:112107098..112109402-chr7:112144271..112146800,2	K562	blood:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10236486	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10953715	0.88[JPT][hapmap]
rs12665935	0.86[AMR][1000 genomes]
rs12666832	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13232491	0.86[AMR][1000 genomes]
rs17159738	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2190589	0.87[CHB][hapmap]
rs2396550	0.88[CEU][hapmap];0.80[CHB][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2396551	0.88[JPT][hapmap]
rs2906789	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2906792	0.84[ASN][1000 genomes]
rs2906793	0.86[ASN][1000 genomes]
rs3095030	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095031	0.88[CEU][hapmap];0.80[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095033	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095034	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128377	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3128378	0.88[CEU][hapmap];0.80[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34669443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35066127	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35207322	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112128400-112145600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:112142400-112146000	Enhancers	Left Ventricle	heart
3	chr7:112142800-112145600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:112142800-112145800	Weak transcription	Fetal Intestine Small	intestine
5	chr7:112143000-112146400	Enhancers	K562	blood
6	chr7:112144200-112145600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:112144200-112148800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:112144400-112150000	Weak transcription	Right Ventricle	heart
9	chr7:112144800-112146400	Enhancers	Fetal Heart	heart
10	chr7:112144800-112146400	Enhancers	Right Atrium	heart

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