Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:112089407..112092118-chr7:112142211..112144188,2	MCF-7	breast:
2	chr7:112089202..112092947-chr7:112141836..112146688,6	K562	blood:
3	chr7:112138620..112143939-chr7:112145486..112149250,7	K562	blood:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10953715	0.80[CHD][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12666832	0.95[ASN][1000 genomes]
rs13232911	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17159738	0.88[ASN][1000 genomes]
rs1859882	0.92[CEU][hapmap]
rs2190589	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs2396550	0.80[CHB][hapmap]
rs2396551	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2906792	0.89[ASN][1000 genomes]
rs2906793	0.90[ASN][1000 genomes]
rs2966475	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs3095031	0.80[CHB][hapmap]
rs3095034	0.93[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3095042	0.87[CEU][hapmap]
rs3111451	0.92[CEU][hapmap]
rs3128378	0.80[CHB][hapmap]
rs3128424	0.83[CEU][hapmap]
rs3128425	0.87[CEU][hapmap]
rs34669443	0.95[ASN][1000 genomes]
rs35066127	0.96[ASN][1000 genomes]
rs35207322	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112128400-112145600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:112142400-112144200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:112142400-112146000	Enhancers	Left Ventricle	heart
4	chr7:112142800-112145600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:112142800-112145800	Weak transcription	Fetal Intestine Small	intestine
6	chr7:112143000-112144800	Weak transcription	Right Atrium	heart
7	chr7:112143000-112146400	Enhancers	K562	blood
8	chr7:112143200-112144400	Enhancers	Fetal Heart	heart
9	chr7:112143400-112144000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:112143600-112144400	Enhancers	Right Ventricle	heart
11	chr7:112143800-112144800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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