Variant report

Variant	rs34669443
Chromosome Location	chr7:112142795-112142796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10236486	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12665935	0.86[AMR][1000 genomes]
rs12666832	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13232491	0.86[AMR][1000 genomes]
rs13232911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159738	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2396550	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2906789	0.95[ASN][1000 genomes]
rs2906792	0.84[ASN][1000 genomes]
rs2906793	0.86[ASN][1000 genomes]
rs3095030	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095031	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095033	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3095034	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128377	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3128378	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35066127	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35207322	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112125400-112143200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:112126000-112143600	Weak transcription	Right Ventricle	heart
3	chr7:112128400-112145600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:112141800-112142800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:112142000-112142800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:112142000-112142800	Enhancers	Fetal Intestine Small	intestine
7	chr7:112142000-112142800	Enhancers	Stomach Mucosa	stomach
8	chr7:112142000-112143000	Enhancers	Fetal Heart	heart
9	chr7:112142200-112143000	Enhancers	Right Atrium	heart
10	chr7:112142200-112143800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:112142400-112143000	Enhancers	Colon Smooth Muscle	Colon
12	chr7:112142400-112144200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr7:112142400-112146000	Enhancers	Left Ventricle	heart
14	chr7:112142600-112143000	Enhancers	Duodenum Mucosa	Duodenum
15	chr7:112142600-112143600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:112142600-112143600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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