Variant report

Variant	rs12666832
Chromosome Location	chr7:112148477-112148478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112138620..112143939-chr7:112145486..112149250,7	K562	blood:
2	chr7:112140217..112143437-chr7:112145511..112148719,3	K562	blood:
3	chr7:112135974..112137750-chr7:112147907..112149600,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10236486	0.94[AMR][1000 genomes]
rs10953715	0.88[JPT][hapmap]
rs12665935	0.85[AMR][1000 genomes]
rs13232491	0.85[AMR][1000 genomes]
rs13232911	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17159738	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2190589	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs2396550	0.82[CEU][hapmap];0.80[CHB][hapmap];0.94[AMR][1000 genomes]
rs2396551	0.88[JPT][hapmap]
rs2906789	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2906792	0.89[ASN][1000 genomes]
rs2906793	0.90[ASN][1000 genomes]
rs3095030	0.94[AMR][1000 genomes]
rs3095031	0.82[CEU][hapmap];0.80[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[AMR][1000 genomes]
rs3095033	0.94[AMR][1000 genomes]
rs3095034	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3128377	0.94[AMR][1000 genomes]
rs3128378	0.82[CEU][hapmap];0.80[CHB][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.94[AMR][1000 genomes]
rs34669443	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35066127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35207322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12666832	LRRN3	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112144200-112148800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:112144400-112150000	Weak transcription	Right Ventricle	heart
3	chr7:112146000-112149000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:112146000-112150000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:112146200-112149200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:112146400-112150400	Weak transcription	Right Atrium	heart

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