Variant report

Variant	rs17159738
Chromosome Location	chr7:112150944-112150945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112150796..112153575-chr7:112390073..112392835,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10236486	0.91[AMR][1000 genomes]
rs12665935	0.90[AMR][1000 genomes]
rs12666832	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13232491	0.90[AMR][1000 genomes]
rs13232911	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2190589	0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2396550	0.80[CHB][hapmap];0.91[AMR][1000 genomes]
rs2906789	1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2906792	0.91[ASN][1000 genomes]
rs2906793	0.92[ASN][1000 genomes]
rs2966491	0.85[GIH][hapmap]
rs3095030	0.91[AMR][1000 genomes]
rs3095031	0.80[CHB][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes]
rs3095033	0.91[AMR][1000 genomes]
rs3095034	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3128377	0.91[AMR][1000 genomes]
rs3128378	0.80[CHB][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes]
rs34669443	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35066127	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35207322	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17159738	LRRN3	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112149000-112151200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:112149400-112151200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:112149400-112151200	Enhancers	NHLF	lung
4	chr7:112149600-112151200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:112149800-112151000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:112149800-112151200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:112149800-112151200	Enhancers	HMEC	breast
8	chr7:112150000-112151000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:112150000-112151000	Enhancers	NHEK	skin
10	chr7:112150000-112151200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:112150200-112151000	Enhancers	Aorta	Aorta
12	chr7:112150200-112151000	Enhancers	Fetal Heart	heart
13	chr7:112150200-112151200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:112150200-112151200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:112150400-112151200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:112150400-112152000	Enhancers	HSMMtube	muscle
17	chr7:112150600-112151000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:112150800-112151200	Enhancers	NH-A	brain
19	chr7:112150800-112151200	Enhancers	Osteobl	bone
20	chr7:112150800-112151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:112150800-112151400	Enhancers	GM12878-XiMat	blood
22	chr7:112150800-112151400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:112150800-112151400	Enhancers	NHDF-Ad	bronchial
24	chr7:112150800-112151600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:112150800-112151600	Weak transcription	Fetal Muscle Leg	muscle
26	chr7:112150800-112151800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:112150800-112151800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:112150800-112152800	Weak transcription	Right Atrium	heart

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