Variant report

Variant	rs3095042
Chromosome Location	chr7:112170119-112170120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112168112..112170674-chr7:112174103..112178389,4	K562	blood:
2	chr7:112061949..112064669-chr7:112169825..112172033,2	K562	blood:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1859882	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2906789	0.87[CEU][hapmap]
rs2966475	0.96[CEU][hapmap]
rs3095044	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3095045	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3095046	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3095047	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3095048	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3095049	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3095051	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3095053	0.81[AMR][1000 genomes]
rs3095057	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3111448	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3111451	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3111452	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3111458	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3111459	0.85[AMR][1000 genomes]
rs3128411	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3128413	0.85[AMR][1000 genomes]
rs3128414	0.85[AMR][1000 genomes]
rs3128415	0.82[AMR][1000 genomes]
rs3128420	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3128422	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128423	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3128424	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128426	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978541	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112169600-112171000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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