Variant report

Variant	rs3128414
Chromosome Location	chr7:112187521-112187522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112186789..112189212-chr7:112536212..112538987,2	K562	blood:
2	chr7:112186668..112189403-chr7:112196363..112199344,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1234346	0.88[EUR][1000 genomes]
rs1236840	0.88[EUR][1000 genomes]
rs1859882	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3095042	0.85[AMR][1000 genomes]
rs3095044	0.84[ASN][1000 genomes]
rs3095045	0.90[ASN][1000 genomes]
rs3095046	0.86[AMR][1000 genomes]
rs3095047	0.84[ASN][1000 genomes]
rs3095048	0.84[ASN][1000 genomes]
rs3095049	0.90[ASN][1000 genomes]
rs3095051	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3095054	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095057	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3111448	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3111451	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3111452	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3111458	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128399	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3128411	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3128413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128415	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128420	0.88[AMR][1000 genomes]
rs3128422	0.84[ASN][1000 genomes]
rs3128423	0.84[ASN][1000 genomes]
rs3128424	0.88[AMR][1000 genomes]
rs3128425	0.83[AMR][1000 genomes]
rs3128426	0.88[AMR][1000 genomes]
rs725312	0.85[AMR][1000 genomes]
rs978541	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112186800-112187600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:112187400-112187600	Flanking Bivalent TSS/Enh	K562	blood

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