Variant report
| Variant | rs3095054 |
|---|---|
| Chromosome Location | chr7:112186623-112186624 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:111392109..111392933-chr7:112186478..112187415,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1234346 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1236840 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1859882 | 0.85[EUR][1000 genomes] |
| rs3095044 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3095045 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3095047 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3095048 | 0.84[ASN][1000 genomes] |
| rs3095049 | 0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3095051 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3095057 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3111448 | 0.82[EUR][1000 genomes] |
| rs3111451 | 0.85[EUR][1000 genomes] |
| rs3111452 | 0.84[ASN][1000 genomes] |
| rs3111458 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3111459 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3128399 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3128411 | 0.85[EUR][1000 genomes] |
| rs3128413 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3128414 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3128415 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3128422 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3128423 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs978541 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | esv1801382 | chr7:112167436-112205264 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112184200-112187200 | Weak transcription | K562 | blood |
