Variant report

Variant	rs3095053
Chromosome Location	chr7:112185518-112185519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1859882	0.83[EUR][1000 genomes]
rs3095042	0.81[AMR][1000 genomes]
rs3095046	0.82[AMR][1000 genomes]
rs3095051	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3095057	0.80[EUR][1000 genomes]
rs3111448	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3111451	0.83[EUR][1000 genomes]
rs3111452	0.81[AMR][1000 genomes]
rs3111458	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3111459	0.80[AFR][1000 genomes]
rs3128411	0.83[EUR][1000 genomes]
rs3128420	0.84[AMR][1000 genomes]
rs3128424	0.84[AMR][1000 genomes]
rs3128426	0.84[AMR][1000 genomes]
rs725312	0.81[AMR][1000 genomes]
rs978541	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv1801382	chr7:112167436-112205264	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112184200-112187200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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