Variant report
| Variant | rs28844 |
|---|---|
| Chromosome Location | chr7:112253850-112253851 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112253801..112256615-chr7:112261041..112263781,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223646 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10224255 | 0.83[ASN][1000 genomes] |
| rs1234346 | 0.86[ASN][1000 genomes] |
| rs1234348 | 0.89[ASN][1000 genomes] |
| rs1234350 | 0.84[EUR][1000 genomes] |
| rs1234351 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1234352 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1234383 | 0.91[ASN][1000 genomes] |
| rs1236840 | 0.82[ASN][1000 genomes] |
| rs12665935 | 0.80[AMR][1000 genomes] |
| rs13232491 | 0.80[AMR][1000 genomes] |
| rs1613412 | 0.90[ASN][1000 genomes] |
| rs1623536 | 0.85[ASN][1000 genomes] |
| rs1796502 | 0.94[ASN][1000 genomes] |
| rs1922899 | 0.81[ASN][1000 genomes] |
| rs1922902 | 0.81[ASN][1000 genomes] |
| rs2079530 | 0.85[ASN][1000 genomes] |
| rs2097672 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2188547 | 0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2188550 | 0.81[ASN][1000 genomes] |
| rs2860402 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2905278 | 0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2905285 | 0.84[ASN][1000 genomes] |
| rs2952678 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2966480 | 0.84[ASN][1000 genomes] |
| rs2966483 | 0.81[ASN][1000 genomes] |
| rs3111438 | 0.82[ASN][1000 genomes] |
| rs3128399 | 0.82[ASN][1000 genomes] |
| rs4473967 | 0.84[ASN][1000 genomes] |
| rs4518580 | 0.89[ASN][1000 genomes] |
| rs977478 | 0.81[ASN][1000 genomes] |
| rs977479 | 0.83[ASN][1000 genomes] |
| rs977480 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
