Variant report
| Variant | rs977479 |
|---|---|
| Chromosome Location | chr7:112303762-112303763 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10224255 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1234383 | 0.88[ASN][1000 genomes] |
| rs1613412 | 0.89[ASN][1000 genomes] |
| rs1796502 | 0.86[ASN][1000 genomes] |
| rs1922899 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1922902 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2188547 | 0.82[ASN][1000 genomes] |
| rs2188550 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2188551 | 0.83[ASN][1000 genomes] |
| rs28844 | 0.83[ASN][1000 genomes] |
| rs2905280 | 1.00[YRI][hapmap] |
| rs2905285 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2905288 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2905291 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2952678 | 0.83[ASN][1000 genomes] |
| rs2952682 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2952683 | 0.92[ASN][1000 genomes] |
| rs2966479 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2966480 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2966482 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2966483 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3111438 | 0.80[ASN][1000 genomes] |
| rs3128399 | 0.80[ASN][1000 genomes] |
| rs977478 | 0.98[ASN][1000 genomes] |
| rs977480 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 2 | nsv889055 | chr7:112174089-112353440 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv523811 | chr7:112295934-112304167 | ZNF genes & repeats Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:112295400-112305800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr7:112303000-112308000 | Weak transcription | Pancreas | Pancrea |
