Variant report

Variant	rs2905291
Chromosome Location	chr7:112317855-112317856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10224255	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1796502	0.84[CHB][hapmap]
rs1922899	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1922902	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2188550	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2188551	0.99[ASN][1000 genomes]
rs2905285	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2905288	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952682	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2952683	0.89[ASN][1000 genomes]
rs2966479	0.81[ASN][1000 genomes]
rs2966480	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2966482	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2966483	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9641493	0.85[ASN][1000 genomes]
rs977478	0.84[ASN][1000 genomes]
rs977479	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs977480	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2905291	CXCL10	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112312800-112318200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:112312800-112319000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:112313200-112319000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:112314200-112318200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:112316200-112318200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:112316200-112318200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:112316400-112318200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:112316600-112318000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:112317400-112318000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:112317600-112318000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:112317600-112318000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:112317600-112318200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:112317600-112318600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:112317600-112318800	Enhancers	Placenta	Placenta
15	chr7:112317800-112318000	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links