Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10224255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1234346	0.83[CHB][hapmap]
rs1234348	0.83[CHB][hapmap]
rs1234383	0.90[ASN][1000 genomes]
rs1613412	0.91[ASN][1000 genomes]
rs1796502	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs1922902	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079530	0.83[CHB][hapmap]
rs2188550	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188551	0.85[ASN][1000 genomes]
rs28844	0.81[ASN][1000 genomes]
rs2905280	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs2905285	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2905288	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2905291	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2952678	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs2952682	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2952683	0.94[ASN][1000 genomes]
rs2952688	0.81[JPT][hapmap]
rs2966479	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2966480	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2966482	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2966483	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518580	0.83[CHB][hapmap]
rs977478	1.00[ASN][1000 genomes]
rs977479	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs977480	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112307400-112310000	Enhancers	Placenta	Placenta
2	chr7:112308000-112316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:112308600-112309600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:112308600-112309600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:112308600-112309600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:112308600-112310000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:112308600-112310000	Enhancers	HMEC	breast
8	chr7:112308800-112309200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:112308800-112309400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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