Variant report

Variant	rs2905280
Chromosome Location	chr7:112259397-112259398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112259003..112261191-chr7:112264638..112266253,2	K562	blood:
2	chr7:112258741..112261534-chr7:112263265..112266138,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10224255	0.85[ASN][1000 genomes]
rs1234346	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs1234348	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs1234351	0.83[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1234352	0.88[ASN][1000 genomes]
rs1234383	0.92[ASN][1000 genomes]
rs1613412	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1623536	0.82[ASN][1000 genomes]
rs1796502	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1922899	0.82[ASN][1000 genomes]
rs1922902	0.82[ASN][1000 genomes]
rs2079530	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs2097672	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2188547	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2188550	0.82[ASN][1000 genomes]
rs2860402	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28844	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2905278	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2905285	0.86[ASN][1000 genomes]
rs2952678	0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2952687	0.94[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2952688	0.94[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2966480	0.86[ASN][1000 genomes]
rs2966483	0.82[ASN][1000 genomes]
rs4473967	0.81[ASN][1000 genomes]
rs4518580	0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs977478	0.82[ASN][1000 genomes]
rs977479	0.84[ASN][1000 genomes]
rs977480	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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