Variant report

Variant	rs2905278
Chromosome Location	chr7:112231770-112231771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10224255	0.80[ASN][1000 genomes]
rs1234346	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1234348	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.92[ASN][1000 genomes]
rs1234350	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1234351	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1234352	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1234383	0.88[ASN][1000 genomes]
rs1236840	0.85[ASN][1000 genomes]
rs1613412	0.87[ASN][1000 genomes]
rs1623536	0.89[ASN][1000 genomes]
rs1796502	0.88[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2079530	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2097672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188547	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2860402	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2905280	0.94[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs2905285	0.81[ASN][1000 genomes]
rs2952678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2952687	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2952688	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs2966480	0.81[ASN][1000 genomes]
rs3111438	0.83[ASN][1000 genomes]
rs3128399	0.83[ASN][1000 genomes]
rs4473967	0.85[ASN][1000 genomes]
rs4518580	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112230800-112235200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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