Variant report

Variant	rs1234350
Chromosome Location	chr7:112223327-112223328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1234348	0.88[EUR][1000 genomes]
rs1234351	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1234352	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2079530	0.85[EUR][1000 genomes]
rs2097672	0.86[EUR][1000 genomes]
rs2188547	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2860402	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28844	0.84[EUR][1000 genomes]
rs2905278	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2952678	0.83[EUR][1000 genomes]
rs4473967	0.85[EUR][1000 genomes]
rs4518580	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112222200-112226000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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