Variant report

Variant	rs3112830
Chromosome Location	chr1:77966494-77966495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77963812..77966662-chr1:77976245..77978998,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1135921	1.00[AMR][1000 genomes]
rs1353727	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1453974	1.00[MEX][hapmap]
rs17100655	1.00[AMR][1000 genomes]
rs17100694	1.00[AMR][1000 genomes]
rs17100731	1.00[AMR][1000 genomes]
rs17100774	1.00[MEX][hapmap]
rs17100781	1.00[AMR][1000 genomes]
rs17100789	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17100791	1.00[MEX][hapmap]
rs17100850	1.00[MEX][hapmap]
rs17100941	1.00[AMR][1000 genomes]
rs1869468	1.00[MEX][hapmap]
rs2047167	1.00[AMR][1000 genomes]
rs2088519	1.00[AMR][1000 genomes]
rs2256679	1.00[AMR][1000 genomes]
rs2270539	1.00[MEX][hapmap]
rs2291689	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2602939	1.00[MEX][hapmap]
rs2647491	1.00[MEX][hapmap]
rs2647495	1.00[AMR][1000 genomes]
rs2647513	1.00[AMR][1000 genomes]
rs2803139	1.00[AMR][1000 genomes]
rs2803144	1.00[MEX][hapmap]
rs2803149	1.00[MEX][hapmap]
rs2803154	1.00[AMR][1000 genomes]
rs2803166	1.00[AMR][1000 genomes]
rs2803167	1.00[AMR][1000 genomes]
rs2803169	1.00[AMR][1000 genomes]
rs2803170	1.00[AMR][1000 genomes]
rs2815331	1.00[MEX][hapmap]
rs2815334	1.00[MEX][hapmap]
rs3104462	1.00[AMR][1000 genomes]
rs3104463	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv871143	chr1:77955577-78031994	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77913200-77968400	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:77956200-77975600	Weak transcription	HSMMtube	muscle
3	chr1:77958200-77974800	Weak transcription	Brain Angular Gyrus	brain
4	chr1:77958400-77974600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:77958800-77974600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:77958800-77974600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:77960000-77968000	Weak transcription	HSMM	muscle
8	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:77960000-77974600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:77962000-77970200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:77963800-77974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:77964000-77974600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:77964800-77970200	Weak transcription	Primary T cells from cord blood	blood
14	chr1:77965200-77966800	Weak transcription	NHDF-Ad	bronchial
15	chr1:77965200-77969600	Weak transcription	HUVEC	blood vessel
16	chr1:77965200-77969800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:77965200-77970600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:77965200-77970600	Weak transcription	Osteobl	bone
19	chr1:77965400-77971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:77965400-77974600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:77965400-77974600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:77965800-77974400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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