Variant report

Variant	rs3116434
Chromosome Location	chr1:84881346-84881347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv946035	chr1:84880590-84881518	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	esv2164245	chr1:84881347-84881348	Enhancers Weak transcription	n/a	n/a	n/a	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84880200-84881600	Enhancers	HUVEC	blood vessel
3	chr1:84881000-84881400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:84881000-84881600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:84881000-84881600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:84881000-84881600	Enhancers	Osteobl	bone
7	chr1:84881200-84881600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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