Variant report

Variant	nsv946035
Chromosome Location	chr1:84880590-84881518
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112382743	chr1:84880613-84880614	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs371551663	chr1:84880636-84880637	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs113023845	chr1:84880641-84880642	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs536690001	chr1:84880675-84880676	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs577897157	chr1:84880682-84880683	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs187710285	chr1:84880720-84880721	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs540418012	chr1:84880760-84880761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs3105612	chr1:84880775-84880776	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs552876344	chr1:84880835-84880836	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs146485346	chr1:84880867-84880868	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs117232117	chr1:84880886-84880887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs141039709	chr1:84880906-84880907	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs548070430	chr1:84880960-84880961	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs543839501	chr1:84881003-84881004	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs563941364	chr1:84881082-84881083	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529627299	chr1:84881089-84881090	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs3116433	chr1:84881095-84881096	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs548683606	chr1:84881121-84881122	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs376763948	chr1:84881128-84881129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528732179	chr1:84881144-84881145	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs35982398	chr1:84881191-84881192	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376039274	chr1:84881199-84881200	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs12755982	chr1:84881200-84881201	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs397861776	chr1:84881201-84881202	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143252563	chr1:84881205-84881206	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs80224497	chr1:84881270-84881271	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546891381	chr1:84881278-84881279	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs34388005	chr1:84881287-84881288	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs3116434	chr1:84881346-84881347	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs536602298	chr1:84881353-84881354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75463799	chr1:84881358-84881359	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs146686815	chr1:84881359-84881360	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs61766262	chr1:84881360-84881361	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs3105613	chr1:84881378-84881379	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs567189552	chr1:84881505-84881506	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs536134797	chr1:84881514-84881515	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Ewing''s sarcoma	17952124	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Multiple myeloma	17550852	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	16397240	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84878800-84880800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:84879200-84881000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:84879200-84881000	Weak transcription	Osteobl	bone
5	chr1:84880200-84881600	Enhancers	HUVEC	blood vessel
6	chr1:84880800-84881000	Enhancers	NH-A	brain
7	chr1:84880800-84881200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:84880800-84881200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:84880800-84881200	Enhancers	Hela-S3	cervix
10	chr1:84881000-84881400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:84881000-84881600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:84881000-84881600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:84881000-84881600	Enhancers	Osteobl	bone
14	chr1:84881200-84881600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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