Variant report

Variant	rs3105612
Chromosome Location	chr1:84880775-84880776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10874439	1.00[AMR][1000 genomes]
rs12026836	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1246391	1.00[YRI][hapmap]
rs2389724	0.93[AFR][1000 genomes]
rs604708	0.92[YRI][hapmap]
rs6576705	1.00[AMR][1000 genomes]
rs6576707	0.90[AMR][1000 genomes]
rs7541611	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv946035	chr1:84880590-84881518	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84878600-84883200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84878800-84880800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:84879200-84881000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:84879200-84881000	Weak transcription	Osteobl	bone
5	chr1:84880200-84881600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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