Variant report

Variant	rs6576707
Chromosome Location	chr1:84900659-84900660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84888633..84891010-chr1:84899091..84900892,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10874439	0.90[AMR][1000 genomes]
rs12026836	0.90[AMR][1000 genomes]
rs3105612	0.90[AMR][1000 genomes]
rs6576705	0.90[AMR][1000 genomes]
rs7541611	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84893400-84902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:84898400-84903000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:84899000-84901000	Enhancers	HMEC	breast
4	chr1:84899200-84901200	Enhancers	NHEK	skin
5	chr1:84899400-84901000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:84899600-84900800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:84899600-84900800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr1:84899600-84900800	Enhancers	Primary hematopoietic stem cells	blood
9	chr1:84899600-84900800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:84899600-84900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:84899600-84900800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:84899600-84901000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:84899600-84901200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:84899600-84901600	Enhancers	GM12878-XiMat	blood
15	chr1:84899600-84901800	Weak transcription	Fetal Brain Male	brain
16	chr1:84899600-84901800	Enhancers	Thymus	Thymus
17	chr1:84899600-84902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:84899600-84902400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:84899600-84902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:84899600-84902400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:84899600-84902400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:84899600-84902600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:84899600-84902600	Weak transcription	Adipose Nuclei	Adipose
24	chr1:84899600-84902800	Weak transcription	Fetal Thymus	thymus
25	chr1:84899600-84903000	Weak transcription	Brain Angular Gyrus	brain
26	chr1:84899600-84903200	Enhancers	Primary B cells from peripheral blood	blood
27	chr1:84899600-84907800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:84899600-84908200	Weak transcription	Stomach Mucosa	stomach
29	chr1:84899600-84908400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr1:84899800-84900800	Enhancers	Brain Hippocampus Middle	brain
31	chr1:84899800-84900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:84899800-84901000	Enhancers	Primary T cells from cord blood	blood
33	chr1:84899800-84901000	Enhancers	Brain Cingulate Gyrus	brain
34	chr1:84899800-84901200	Weak transcription	Brain Anterior Caudate	brain
35	chr1:84899800-84901200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:84899800-84901400	Enhancers	Dnd41	blood
37	chr1:84899800-84901600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr1:84899800-84907800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr1:84900000-84900800	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:84900000-84900800	Weak transcription	NHLF	lung
41	chr1:84900000-84902600	Weak transcription	Brain Substantia Nigra	brain
42	chr1:84900000-84902800	Weak transcription	Fetal Brain Female	brain
43	chr1:84900000-84903000	Weak transcription	Aorta	Aorta
44	chr1:84900400-84900800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr1:84900400-84900800	Enhancers	NHDF-Ad	bronchial
46	chr1:84900400-84900800	Enhancers	Osteobl	bone
47	chr1:84900400-84901200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:84900400-84901600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr1:84900400-84901800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr1:84900400-84901800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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