Variant report

Variant	rs12026836
Chromosome Location	chr1:84877267-84877268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10874439	1.00[AMR][1000 genomes]
rs1246391	1.00[YRI][hapmap]
rs2389724	0.86[AFR][1000 genomes]
rs3105612	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs604708	0.92[YRI][hapmap]
rs6576705	1.00[AMR][1000 genomes]
rs6576707	0.90[AMR][1000 genomes]
rs7541611	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv823387	chr1:84876670-84877290	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84874000-84878200	Weak transcription	Psoas Muscle	Psoas
2	chr1:84874200-84878000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:84874200-84878200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:84874400-84878200	Weak transcription	Aorta	Aorta
5	chr1:84875600-84878200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:84876400-84877400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:84876400-84878000	Enhancers	Osteobl	bone
8	chr1:84876800-84878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:84877000-84880200	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links