Variant report

Variant	rs604708
Chromosome Location	chr1:84868961-84868962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12026836	0.92[YRI][hapmap]
rs1246391	1.00[CEU][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754275	1.00[ASN][1000 genomes]
rs41293021	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41298531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617178	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576706	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
IgG glycosylation	23382691	GWAS catalog

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84863000-84871200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:84867200-84869000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84867400-84869400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:84868000-84872200	Weak transcription	HUVEC	blood vessel
5	chr1:84868000-84872200	Weak transcription	NHDF-Ad	bronchial
6	chr1:84868600-84869000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:84868600-84871200	Weak transcription	HMEC	breast
8	chr1:84868600-84872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:84868600-84872000	Weak transcription	NHEK	skin
10	chr1:84868800-84869800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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