Variant report
| Variant | rs3118021 |
|---|---|
| Chromosome Location | chr1:58173935-58173936 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:58172405..58174844-chr1:58175238..58177521,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12061486 | 1.00[MEX][hapmap] |
| rs1323811 | 1.00[MEX][hapmap] |
| rs13375506 | 1.00[MEX][hapmap] |
| rs3118017 | 1.00[EUR][1000 genomes] |
| rs3118022 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3118026 | 1.00[EUR][1000 genomes] |
| rs3118066 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3118068 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3126022 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3126029 | 0.95[YRI][hapmap] |
| rs3131716 | 1.00[EUR][1000 genomes] |
| rs3131721 | 1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs3131722 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7512763 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7555442 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015057 | chr1:57976993-58793962 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv530017 | chr1:58002290-58669736 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
