Variant report

Variant	rs3119858
Chromosome Location	chr13:61331823-61331824
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1028070	0.85[AMR][1000 genomes]
rs1159428	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1399145	0.85[AMR][1000 genomes]
rs2090088	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2102666	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2221964	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3106557	0.80[AMR][1000 genomes]
rs3119856	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3119857	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3119865	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3119881	0.80[AMR][1000 genomes]
rs3119884	0.83[YRI][hapmap]
rs3120234	0.80[AMR][1000 genomes]
rs3127024	0.80[AMR][1000 genomes]
rs3127025	0.80[AMR][1000 genomes]
rs3843955	0.87[AMR][1000 genomes]
rs3914422	0.87[AMR][1000 genomes]
rs4551927	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61328200-61334400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:61329000-61333600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:61329000-61334000	Enhancers	Fetal Brain Male	brain
4	chr13:61329600-61332200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:61330200-61334600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:61330400-61334200	Enhancers	Fetal Brain Female	brain
7	chr13:61330400-61335000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:61330600-61332400	Weak transcription	NHEK	skin
9	chr13:61330600-61334000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:61330800-61332000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:61330800-61332400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:61330800-61333200	Weak transcription	HUVEC	blood vessel
13	chr13:61330800-61333600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:61330800-61333600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:61330800-61334400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:61331000-61333800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:61331200-61332400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:61331200-61333600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:61331200-61334600	Enhancers	Fetal Heart	heart
20	chr13:61331400-61332200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr13:61331400-61332800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:61331600-61332200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr13:61331600-61332600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:61331600-61333600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr13:61331600-61333800	Enhancers	Fetal Intestine Small	intestine
26	chr13:61331600-61334600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:61331800-61332000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr13:61331800-61332000	Enhancers	Right Atrium	heart
29	chr13:61331800-61332200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr13:61331800-61333000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr13:61331800-61333800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:61331800-61334200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr13:61331800-61334600	Enhancers	HUES64 Cell Line	embryonic stem cell

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