Variant report
| Variant | rs3914422 |
|---|---|
| Chromosome Location | chr13:61319605-61319606 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1028070 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1159428 | 0.92[AMR][1000 genomes] |
| rs1329692 | 1.00[ASN][1000 genomes] |
| rs1355901 | 1.00[ASN][1000 genomes] |
| rs1399145 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1514160 | 1.00[ASN][1000 genomes] |
| rs17058775 | 1.00[ASN][1000 genomes] |
| rs2090088 | 0.95[AMR][1000 genomes] |
| rs2102666 | 0.92[AMR][1000 genomes] |
| rs2221964 | 0.92[AMR][1000 genomes] |
| rs3106557 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3119858 | 0.87[AMR][1000 genomes] |
| rs3119865 | 0.92[AMR][1000 genomes] |
| rs3119881 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs3120234 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3127024 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3127025 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3843955 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4551927 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4595694 | 1.00[ASN][1000 genomes] |
| rs6420327 | 1.00[ASN][1000 genomes] |
| rs907983 | 1.00[ASN][1000 genomes] |
| rs907984 | 1.00[ASN][1000 genomes] |
| rs9538874 | 1.00[ASN][1000 genomes] |
| rs9563838 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817223 | chr13:60623429-61453435 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv900241 | chr13:61217896-61368021 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv832623 | chr13:61303818-61468576 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1037954 | chr13:61319533-61395907 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61314600-61327800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr13:61319400-61319800 | Enhancers | Fetal Heart | heart |
