Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1028070	1.00[ASN][1000 genomes]
rs1329692	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355901	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399145	1.00[ASN][1000 genomes]
rs1399146	1.00[EUR][1000 genomes]
rs1399147	1.00[EUR][1000 genomes]
rs1514160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514166	1.00[EUR][1000 genomes]
rs17058775	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106557	1.00[ASN][1000 genomes]
rs3120234	1.00[ASN][1000 genomes]
rs3127024	1.00[ASN][1000 genomes]
rs3127025	1.00[ASN][1000 genomes]
rs3843955	1.00[ASN][1000 genomes]
rs3914422	1.00[ASN][1000 genomes]
rs4551927	1.00[ASN][1000 genomes]
rs6420327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562130	1.00[EUR][1000 genomes]
rs6562131	1.00[EUR][1000 genomes]
rs907983	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs907984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9538874	1.00[ASN][1000 genomes]
rs9563838	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3380571	chr13:61314513-61316518	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61314600-61327800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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