Variant report

Variant	rs9538874
Chromosome Location	chr13:61268024-61268025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1028070	1.00[ASN][1000 genomes]
rs1329692	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355901	1.00[ASN][1000 genomes]
rs1399145	1.00[ASN][1000 genomes]
rs1514160	1.00[ASN][1000 genomes]
rs17058775	1.00[ASN][1000 genomes]
rs3106557	1.00[ASN][1000 genomes]
rs3120234	1.00[ASN][1000 genomes]
rs3127024	1.00[ASN][1000 genomes]
rs3127025	1.00[ASN][1000 genomes]
rs3843955	1.00[ASN][1000 genomes]
rs3914422	1.00[ASN][1000 genomes]
rs4551927	1.00[ASN][1000 genomes]
rs4595694	1.00[ASN][1000 genomes]
rs6420327	1.00[ASN][1000 genomes]
rs907983	1.00[ASN][1000 genomes]
rs907984	1.00[ASN][1000 genomes]
rs9563838	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61265800-61270400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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