Variant report

Variant	rs1329692
Chromosome Location	chr13:61269388-61269389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1028070	1.00[ASN][1000 genomes]
rs1355901	1.00[ASN][1000 genomes]
rs1399145	1.00[ASN][1000 genomes]
rs1399146	0.85[EUR][1000 genomes]
rs1399147	0.85[EUR][1000 genomes]
rs1514160	1.00[ASN][1000 genomes]
rs1514166	0.85[EUR][1000 genomes]
rs17058775	1.00[ASN][1000 genomes]
rs3106557	1.00[ASN][1000 genomes]
rs3120234	1.00[ASN][1000 genomes]
rs3127024	1.00[ASN][1000 genomes]
rs3127025	1.00[ASN][1000 genomes]
rs3843955	1.00[ASN][1000 genomes]
rs3914422	1.00[ASN][1000 genomes]
rs4551927	1.00[ASN][1000 genomes]
rs4595694	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6420327	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6562130	0.85[EUR][1000 genomes]
rs6562131	0.85[EUR][1000 genomes]
rs907983	1.00[ASN][1000 genomes]
rs907984	1.00[ASN][1000 genomes]
rs9538874	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563838	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61265800-61270400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:61269000-61269800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:61269000-61269800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:61269200-61270200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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