Variant report

Variant	rs3121256
Chromosome Location	chr1:223373380-223373381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11485986	0.98[ASN][1000 genomes]
rs1612521	0.91[ASN][1000 genomes]
rs1773719	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1773722	0.91[ASN][1000 genomes]
rs1773723	0.91[ASN][1000 genomes]
rs2160152	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2430407	0.95[ASN][1000 genomes]
rs2430408	0.95[ASN][1000 genomes]
rs2430410	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35797130	0.91[ASN][1000 genomes]
rs3768284	0.95[ASN][1000 genomes]
rs4661283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4661284	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs712862	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712865	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725972	0.91[ASN][1000 genomes]
rs73120253	0.98[ASN][1000 genomes]
rs73120267	1.00[ASN][1000 genomes]
rs73120269	1.00[ASN][1000 genomes]
rs851140	0.87[EUR][1000 genomes]
rs851144	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851146	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851147	0.87[EUR][1000 genomes]
rs851151	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs851156	0.87[EUR][1000 genomes]
rs851160	1.00[ASN][1000 genomes]
rs851163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851165	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223369000-223373600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:223369400-223373800	Weak transcription	Fetal Thymus	thymus
4	chr1:223370600-223375000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:223371200-223389800	Weak transcription	Gastric	stomach
6	chr1:223371400-223375200	Weak transcription	Esophagus	oesophagus
7	chr1:223371800-223373400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr1:223373000-223373400	Weak transcription	Monocytes-CD14+_RO01746	blood

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