Variant report

Variant	rs1773723
Chromosome Location	chr1:223369250-223369251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223361957..223364992-chr1:223369104..223372360,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11485986	0.93[ASN][1000 genomes]
rs11485987	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs11488550	1.00[TSI][hapmap]
rs1612521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624408	0.83[AMR][1000 genomes]
rs1640803	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs1640806	1.00[MEX][hapmap]
rs1640811	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs1640812	0.85[JPT][hapmap]
rs1640813	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs1640816	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs1640862	1.00[MEX][hapmap]
rs1640869	0.83[AMR][1000 genomes]
rs1773719	1.00[ASN][1000 genomes]
rs1773720	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1773721	0.87[AFR][1000 genomes]
rs1773722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935305	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs2160152	0.89[ASN][1000 genomes]
rs2430407	0.95[ASN][1000 genomes]
rs2430408	0.95[ASN][1000 genomes]
rs2430410	1.00[ASN][1000 genomes]
rs2430411	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2487841	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2609374	1.00[EUR][1000 genomes]
rs3121256	0.91[ASN][1000 genomes]
rs35797130	1.00[ASN][1000 genomes]
rs35801972	0.83[AMR][1000 genomes]
rs3768284	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[ASN][1000 genomes]
rs4661283	1.00[ASN][1000 genomes]
rs4661284	1.00[ASN][1000 genomes]
rs5744134	1.00[MEX][hapmap]
rs5744135	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744138	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744139	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744140	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744143	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744149	0.90[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs5744151	1.00[TSI][hapmap]
rs5744153	1.00[TSI][hapmap]
rs712862	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs712863	0.91[ASN][1000 genomes]
rs712865	0.91[ASN][1000 genomes]
rs725971	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs725972	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73120253	0.89[ASN][1000 genomes]
rs73120267	0.91[ASN][1000 genomes]
rs73120269	0.91[ASN][1000 genomes]
rs851140	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs851144	0.95[ASN][1000 genomes]
rs851146	0.95[ASN][1000 genomes]
rs851151	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs851153	1.00[MEX][hapmap]
rs851159	1.00[MEX][hapmap]
rs851160	0.91[ASN][1000 genomes]
rs851163	0.91[ASN][1000 genomes]
rs851211	1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs851215	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs860372	1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs988241	0.95[CHD][hapmap];0.85[JPT][hapmap]
rs988242	0.95[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223363200-223370400	Weak transcription	Gastric	stomach
3	chr1:223368000-223369400	Enhancers	Fetal Thymus	thymus
4	chr1:223368800-223371200	Enhancers	Stomach Mucosa	stomach
5	chr1:223369000-223370400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:223369000-223373600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:223369200-223370800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links