Variant report

Variant	rs35801972
Chromosome Location	chr1:223372434-223372435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1612521	0.83[AMR][1000 genomes]
rs1624408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1640869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1773720	1.00[AMR][1000 genomes]
rs1773721	0.83[AMR][1000 genomes]
rs1773722	0.83[AMR][1000 genomes]
rs1773723	0.83[AMR][1000 genomes]
rs2430411	1.00[AMR][1000 genomes]
rs2487841	1.00[AMR][1000 genomes]
rs28373518	1.00[EUR][1000 genomes]
rs28445941	1.00[EUR][1000 genomes]
rs28488039	1.00[EUR][1000 genomes]
rs28782805	1.00[EUR][1000 genomes]
rs5744110	1.00[EUR][1000 genomes]
rs6658085	1.00[EUR][1000 genomes]
rs6693240	1.00[EUR][1000 genomes]
rs725971	1.00[AMR][1000 genomes]
rs725972	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223369000-223373600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr1:223369400-223373800	Weak transcription	Fetal Thymus	thymus
4	chr1:223370600-223375000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:223371200-223389800	Weak transcription	Gastric	stomach
6	chr1:223371400-223372600	Weak transcription	Pancreas	Pancrea
7	chr1:223371400-223375200	Weak transcription	Esophagus	oesophagus
8	chr1:223371600-223372800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:223371800-223372800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:223371800-223372800	Enhancers	HMEC	breast
11	chr1:223371800-223372800	Enhancers	NHEK	skin
12	chr1:223371800-223373400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:223372000-223372600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:223372400-223372800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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