Variant report

Variant	rs1624408
Chromosome Location	chr1:223368840-223368841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1612521	0.83[AMR][1000 genomes]
rs1640869	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1773720	1.00[AMR][1000 genomes]
rs1773721	0.83[AMR][1000 genomes]
rs1773722	0.83[AMR][1000 genomes]
rs1773723	0.83[AMR][1000 genomes]
rs2430411	1.00[AMR][1000 genomes]
rs2487841	1.00[AMR][1000 genomes]
rs28373518	1.00[EUR][1000 genomes]
rs28445941	1.00[EUR][1000 genomes]
rs28488039	1.00[EUR][1000 genomes]
rs28782805	1.00[EUR][1000 genomes]
rs35801972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744110	1.00[EUR][1000 genomes]
rs6658085	1.00[EUR][1000 genomes]
rs6693240	1.00[EUR][1000 genomes]
rs725971	1.00[AMR][1000 genomes]
rs725972	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223363200-223370400	Weak transcription	Gastric	stomach
3	chr1:223368000-223369400	Enhancers	Fetal Thymus	thymus
4	chr1:223368200-223369000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:223368800-223369000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr1:223368800-223369200	Enhancers	Thymus	Thymus
7	chr1:223368800-223371200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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