Variant report

Variant	rs1773721
Chromosome Location	chr1:223365411-223365412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1612521	0.87[AFR][1000 genomes]
rs1624408	0.83[AMR][1000 genomes]
rs1640869	0.83[AMR][1000 genomes]
rs1773720	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1773722	0.87[AFR][1000 genomes]
rs1773723	0.87[AFR][1000 genomes]
rs2430411	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2487841	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35801972	0.83[AMR][1000 genomes]
rs725971	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223349800-223375400	Weak transcription	Right Atrium	heart
2	chr1:223361600-223365600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr1:223361800-223366400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:223362200-223366200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:223363200-223370400	Weak transcription	Gastric	stomach
6	chr1:223364000-223366400	Weak transcription	Fetal Thymus	thymus
7	chr1:223364200-223365800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:223364800-223367000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr1:223365000-223366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:223365400-223365800	Weak transcription	Primary T cells from cord blood	blood
11	chr1:223365400-223366400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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