Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1035104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11485987	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1640803	1.00[CEU][hapmap]
rs3768284	1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap]
rs5744122	1.00[CEU][hapmap]
rs5744135	1.00[JPT][hapmap]
rs5744138	1.00[JPT][hapmap]
rs5744139	1.00[JPT][hapmap]
rs5744140	1.00[JPT][hapmap]
rs5744143	1.00[JPT][hapmap]
rs5744149	1.00[JPT][hapmap]
rs712862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap]
rs73120300	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs851140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs851146	0.87[AMR][1000 genomes]
rs851147	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs851148	1.00[CEU][hapmap]
rs851151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs851152	1.00[CEU][hapmap]
rs851153	1.00[CEU][hapmap]
rs851211	0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs851215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs860372	C1orf115	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223407600-223419400	Weak transcription	Esophagus	oesophagus
2	chr1:223407800-223416600	Weak transcription	Stomach Mucosa	stomach
3	chr1:223407800-223419600	Weak transcription	Right Atrium	heart
4	chr1:223408000-223410200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:223408400-223413600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr1:223408400-223413600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:223408400-223413800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:223408400-223417400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

Quick Search: