Variant report

Variant rs5744139
Chromosome Location chr1:223309628-223309629
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223303200-223314600 Weak transcription Spleen Spleen
2 chr1:223306600-223310000 Enhancers Lung lung
3 chr1:223306800-223310000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:223306800-223310600 Enhancers Esophagus oesophagus
5 chr1:223307600-223311400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:223307600-223311600 Enhancers Adipose Nuclei Adipose
7 chr1:223307600-223311600 Enhancers Placenta Placenta
8 chr1:223307600-223314200 Weak transcription Right Ventricle heart
9 chr1:223307600-223315800 Weak transcription Right Atrium heart
10 chr1:223307800-223309800 Enhancers Breast Myoepithelial Primary Cells Breast
11 chr1:223307800-223309800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr1:223307800-223309800 Enhancers Rectal Smooth Muscle rectum
13 chr1:223307800-223310400 Weak transcription Liver Liver
14 chr1:223307800-223310400 Weak transcription Brain Anterior Caudate brain
15 chr1:223307800-223310400 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:223307800-223310400 Enhancers Skeletal Muscle Female skeletal muscle
17 chr1:223307800-223311200 Enhancers HMEC breast
18 chr1:223307800-223312600 Enhancers Primary monocytes fromperipheralblood blood
19 chr1:223308000-223311000 Enhancers Skeletal Muscle Male skeletal muscle
20 chr1:223308200-223309800 Enhancers Fetal Muscle Trunk muscle
21 chr1:223308400-223310600 Enhancers Psoas Muscle Psoas
22 chr1:223308600-223309800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:223308600-223309800 Enhancers Fetal Muscle Leg muscle
24 chr1:223308600-223309800 Genic enhancers Monocytes-CD14+_RO01746 blood
25 chr1:223308600-223314000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr1:223308800-223310600 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
27 chr1:223308800-223310800 Weak transcription Hela-S3 cervix
28 chr1:223308800-223314000 Weak transcription Gastric stomach
29 chr1:223308800-223314000 Weak transcription Pancreas Pancrea
30 chr1:223308800-223314000 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:223308800-223314400 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:223308800-223314600 Weak transcription Colonic Mucosa Colon
33 chr1:223309000-223309800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:223309000-223309800 Enhancers Osteobl bone
35 chr1:223309000-223310400 Weak transcription NHDF-Ad bronchial
36 chr1:223309000-223310600 Weak transcription Duodenum Mucosa Duodenum
37 chr1:223309000-223310600 Weak transcription HSMM muscle
38 chr1:223309000-223311600 Enhancers Fetal Lung lung
39 chr1:223309000-223314200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:223309200-223310000 Enhancers NHEK skin
41 chr1:223309200-223315800 Weak transcription Primary T cells from cord blood blood
42 chr1:223309400-223310400 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr1:223309400-223310600 Weak transcription Muscle Satellite Cultured Cells --
44 chr1:223309400-223316000 Weak transcription NHLF lung
45 chr1:223309600-223309800 Enhancers Fetal Thymus thymus
46 chr1:223309600-223310000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:223309600-223310600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr1:223309600-223314600 Weak transcription Ovary ovary
49 chr1:223309600-223314600 Weak transcription Stomach Smooth Muscle stomach

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