Variant report

Variant	rs1640803
Chromosome Location	chr1:223334049-223334050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223332954..223335487-chr1:223336735..223338722,2	K562	blood:
2	chr1:223314512..223320175-chr1:223328849..223336149,9	MCF-7	breast:
3	chr1:223318487..223320795-chr1:223328403..223334378,5	K562	blood:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction
ENSG00000236846	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10489492	0.93[ASN][1000 genomes]
rs11485988	0.87[EUR][1000 genomes]
rs11486079	0.98[ASN][1000 genomes]
rs11488551	0.87[EUR][1000 genomes]
rs1361642	0.91[ASN][1000 genomes]
rs1417744	1.00[MEX][hapmap]
rs1418145	0.82[ASN][1000 genomes]
rs1418146	0.82[ASN][1000 genomes]
rs1612398	0.98[ASN][1000 genomes]
rs1640809	0.93[ASN][1000 genomes]
rs1640811	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs1640812	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs1640813	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[ASN][1000 genomes]
rs1640814	0.93[ASN][1000 genomes]
rs1640815	0.93[ASN][1000 genomes]
rs1640816	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1640817	0.91[ASN][1000 genomes]
rs1640818	0.91[ASN][1000 genomes]
rs1640819	0.91[ASN][1000 genomes]
rs1640820	0.93[ASN][1000 genomes]
rs1640823	0.91[ASN][1000 genomes]
rs17163743	0.98[ASN][1000 genomes]
rs1773738	0.93[ASN][1000 genomes]
rs1773744	0.93[ASN][1000 genomes]
rs1773749	0.98[ASN][1000 genomes]
rs1773752	0.82[ASW][hapmap]
rs1773753	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1773754	0.98[ASN][1000 genomes]
rs1773761	0.93[ASN][1000 genomes]
rs1773762	0.93[ASN][1000 genomes]
rs1773763	0.93[ASN][1000 genomes]
rs1773765	0.93[ASN][1000 genomes]
rs1773766	0.91[ASN][1000 genomes]
rs1773767	0.91[ASN][1000 genomes]
rs1773768	0.91[ASN][1000 genomes]
rs1935305	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2253649	1.00[MEX][hapmap]
rs2256707	0.93[ASN][1000 genomes]
rs2302597	0.93[ASN][1000 genomes]
rs2353474	0.91[ASN][1000 genomes]
rs2430400	0.93[ASN][1000 genomes]
rs2430407	0.86[EUR][1000 genomes]
rs2430408	0.86[EUR][1000 genomes]
rs2430409	0.86[EUR][1000 genomes]
rs2487834	0.93[ASN][1000 genomes]
rs2487836	0.93[ASN][1000 genomes]
rs34071437	0.86[EUR][1000 genomes]
rs34136554	0.93[ASN][1000 genomes]
rs34218350	0.86[EUR][1000 genomes]
rs34552707	0.98[ASN][1000 genomes]
rs35169648	0.87[EUR][1000 genomes]
rs35227692	0.86[EUR][1000 genomes]
rs35412940	1.00[EUR][1000 genomes]
rs35551279	0.86[EUR][1000 genomes]
rs35579200	0.98[ASN][1000 genomes]
rs35644560	0.87[EUR][1000 genomes]
rs35778136	0.86[EUR][1000 genomes]
rs35797130	1.00[AMR][1000 genomes]
rs3768284	0.95[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs5744122	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs5744135	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744138	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744139	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744140	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744143	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744149	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs5744167	1.00[MEX][hapmap]
rs5744171	1.00[TSI][hapmap]
rs66553000	0.98[ASN][1000 genomes]
rs66662427	0.93[ASN][1000 genomes]
rs66757010	0.93[ASN][1000 genomes]
rs66832195	0.93[ASN][1000 genomes]
rs66938974	0.98[ASN][1000 genomes]
rs67573944	0.93[ASN][1000 genomes]
rs67623966	0.98[ASN][1000 genomes]
rs67639934	0.98[ASN][1000 genomes]
rs67883821	0.98[ASN][1000 genomes]
rs712862	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs723961	0.93[ASN][1000 genomes]
rs72743851	0.93[ASN][1000 genomes]
rs72743852	0.91[ASN][1000 genomes]
rs73118159	0.98[ASN][1000 genomes]
rs73118166	1.00[EUR][1000 genomes]
rs73118168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73118170	1.00[EUR][1000 genomes]
rs73118175	1.00[EUR][1000 genomes]
rs73118176	0.87[EUR][1000 genomes]
rs73118177	0.87[EUR][1000 genomes]
rs73118181	0.87[EUR][1000 genomes]
rs73118186	0.87[EUR][1000 genomes]
rs73118187	0.87[EUR][1000 genomes]
rs73118190	0.87[EUR][1000 genomes]
rs73118193	0.87[EUR][1000 genomes]
rs73118194	0.87[EUR][1000 genomes]
rs73118198	0.87[EUR][1000 genomes]
rs73118201	0.87[EUR][1000 genomes]
rs73118202	0.87[EUR][1000 genomes]
rs73120203	0.87[EUR][1000 genomes]
rs73120204	0.87[EUR][1000 genomes]
rs73120206	1.00[EUR][1000 genomes]
rs73120207	0.87[EUR][1000 genomes]
rs73120219	0.87[EUR][1000 genomes]
rs73120222	1.00[EUR][1000 genomes]
rs73120224	0.87[EUR][1000 genomes]
rs73120229	0.87[EUR][1000 genomes]
rs73120232	0.87[EUR][1000 genomes]
rs73120234	1.00[EUR][1000 genomes]
rs73120236	0.86[EUR][1000 genomes]
rs73120250	0.86[EUR][1000 genomes]
rs73120253	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120257	0.86[EUR][1000 genomes]
rs73120261	0.86[EUR][1000 genomes]
rs73120265	0.86[EUR][1000 genomes]
rs73120267	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120269	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120297	0.86[EUR][1000 genomes]
rs759303	0.93[ASN][1000 genomes]
rs825126	1.00[MEX][hapmap]
rs851140	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs851145	0.86[EUR][1000 genomes]
rs851147	1.00[CEU][hapmap]
rs851148	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs851150	0.86[EUR][1000 genomes]
rs851151	1.00[CEU][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs851152	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs851153	1.00[CEU][hapmap]
rs851154	0.86[EUR][1000 genomes]
rs851155	0.86[EUR][1000 genomes]
rs851158	0.86[EUR][1000 genomes]
rs851195	1.00[MEX][hapmap]
rs851197	1.00[MEX][hapmap]
rs851200	1.00[MEX][hapmap]
rs860372	1.00[CEU][hapmap]
rs988241	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs988242	0.82[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs988779	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223327200-223334600	Weak transcription	Fetal Thymus	thymus
2	chr1:223329200-223338600	Weak transcription	Placenta	Placenta
3	chr1:223331200-223334600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:223333600-223335400	Enhancers	Primary T cells from cord blood	blood
5	chr1:223333800-223334600	Enhancers	Fetal Brain Male	brain

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