Variant report

Variant	rs73120261
Chromosome Location	chr1:223380948-223380949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223379763..223382096-chr1:223384023..223385661,2	MCF-7	breast:
2	chr1:223380921..223383120-chr1:223521452..223523645,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11485988	1.00[AMR][1000 genomes]
rs11488551	1.00[AMR][1000 genomes]
rs1640803	0.86[EUR][1000 genomes]
rs2160152	0.86[EUR][1000 genomes]
rs2430407	1.00[EUR][1000 genomes]
rs2430408	1.00[EUR][1000 genomes]
rs2430409	1.00[EUR][1000 genomes]
rs34071437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34218350	1.00[EUR][1000 genomes]
rs35169648	1.00[AMR][1000 genomes]
rs35227692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35412940	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35551279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35644560	1.00[AMR][1000 genomes]
rs35778136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744122	1.00[AMR][1000 genomes]
rs712862	0.86[EUR][1000 genomes]
rs73118152	1.00[AMR][1000 genomes]
rs73118166	0.86[EUR][1000 genomes]
rs73118168	0.86[EUR][1000 genomes]
rs73118170	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73118175	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73118176	1.00[AMR][1000 genomes]
rs73118177	1.00[AMR][1000 genomes]
rs73118181	1.00[AMR][1000 genomes]
rs73118186	1.00[AMR][1000 genomes]
rs73118187	1.00[AMR][1000 genomes]
rs73118190	1.00[AMR][1000 genomes]
rs73118193	1.00[AMR][1000 genomes]
rs73118194	1.00[AMR][1000 genomes]
rs73118198	1.00[AMR][1000 genomes]
rs73118201	1.00[AMR][1000 genomes]
rs73118202	1.00[AMR][1000 genomes]
rs73120203	1.00[AMR][1000 genomes]
rs73120204	1.00[AMR][1000 genomes]
rs73120206	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120207	1.00[AMR][1000 genomes]
rs73120214	1.00[AMR][1000 genomes]
rs73120219	1.00[AMR][1000 genomes]
rs73120222	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120224	1.00[AMR][1000 genomes]
rs73120229	1.00[AMR][1000 genomes]
rs73120232	1.00[AMR][1000 genomes]
rs73120234	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73120236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120248	0.94[AFR][1000 genomes]
rs73120250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120252	0.94[AFR][1000 genomes]
rs73120253	1.00[EUR][1000 genomes]
rs73120257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120267	1.00[EUR][1000 genomes]
rs73120269	1.00[EUR][1000 genomes]
rs73120270	0.87[AFR][1000 genomes]
rs73120271	0.87[AFR][1000 genomes]
rs73120274	0.87[AFR][1000 genomes]
rs73120283	0.87[AFR][1000 genomes]
rs73120297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs851140	0.86[EUR][1000 genomes]
rs851144	0.86[EUR][1000 genomes]
rs851145	1.00[EUR][1000 genomes]
rs851146	0.86[EUR][1000 genomes]
rs851147	0.86[EUR][1000 genomes]
rs851148	1.00[EUR][1000 genomes]
rs851150	1.00[EUR][1000 genomes]
rs851151	0.86[EUR][1000 genomes]
rs851152	1.00[EUR][1000 genomes]
rs851154	1.00[EUR][1000 genomes]
rs851155	1.00[EUR][1000 genomes]
rs851156	0.86[EUR][1000 genomes]
rs851158	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223371200-223389800	Weak transcription	Gastric	stomach
2	chr1:223377000-223392200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:223377400-223382400	Weak transcription	K562	blood
4	chr1:223378600-223382200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:223379600-223388000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:223380000-223381800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:223380200-223381000	Enhancers	Adipose Nuclei	Adipose
8	chr1:223380800-223381400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:223380800-223382400	Enhancers	HSMMtube	muscle
10	chr1:223380800-223382400	Enhancers	NH-A	brain
11	chr1:223380800-223382600	Enhancers	HSMM	muscle

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