Variant report
Variant | rs73118152 |
---|---|
Chromosome Location | chr1:223320896-223320897 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
TLR5 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11485988 | 1.00[AMR][1000 genomes] |
rs11488551 | 1.00[AMR][1000 genomes] |
rs28520264 | 0.86[EUR][1000 genomes] |
rs34071437 | 1.00[AMR][1000 genomes] |
rs35169648 | 1.00[AMR][1000 genomes] |
rs35227692 | 1.00[AMR][1000 genomes] |
rs35412940 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs35551279 | 1.00[AMR][1000 genomes] |
rs35644560 | 1.00[AMR][1000 genomes] |
rs35778136 | 1.00[AMR][1000 genomes] |
rs5744122 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs5744171 | 0.86[EUR][1000 genomes] |
rs5744175 | 0.86[EUR][1000 genomes] |
rs5744177 | 0.86[EUR][1000 genomes] |
rs73118168 | 1.00[AFR][1000 genomes] |
rs73118170 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73118175 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73118176 | 1.00[AMR][1000 genomes] |
rs73118177 | 1.00[AMR][1000 genomes] |
rs73118181 | 1.00[AMR][1000 genomes] |
rs73118186 | 1.00[AMR][1000 genomes] |
rs73118187 | 1.00[AMR][1000 genomes] |
rs73118190 | 1.00[AMR][1000 genomes] |
rs73118193 | 1.00[AMR][1000 genomes] |
rs73118194 | 1.00[AMR][1000 genomes] |
rs73118198 | 1.00[AMR][1000 genomes] |
rs73118201 | 1.00[AMR][1000 genomes] |
rs73118202 | 1.00[AMR][1000 genomes] |
rs73120203 | 1.00[AMR][1000 genomes] |
rs73120204 | 1.00[AMR][1000 genomes] |
rs73120206 | 1.00[AMR][1000 genomes] |
rs73120207 | 1.00[AMR][1000 genomes] |
rs73120214 | 1.00[AMR][1000 genomes] |
rs73120219 | 1.00[AMR][1000 genomes] |
rs73120222 | 1.00[AMR][1000 genomes] |
rs73120224 | 1.00[AMR][1000 genomes] |
rs73120229 | 1.00[AMR][1000 genomes] |
rs73120232 | 1.00[AMR][1000 genomes] |
rs73120234 | 1.00[AMR][1000 genomes] |
rs73120236 | 1.00[AMR][1000 genomes] |
rs73120250 | 1.00[AMR][1000 genomes] |
rs73120257 | 1.00[AMR][1000 genomes] |
rs73120261 | 1.00[AMR][1000 genomes] |
rs73120265 | 1.00[AMR][1000 genomes] |
rs73120297 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012537 | chr1:222755091-223512243 | Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv1014896 | chr1:223070446-223327185 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv832659 | chr1:223294767-223438487 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:223317600-223326800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr1:223317800-223321400 | Weak transcription | Gastric | stomach |
3 | chr1:223318000-223321400 | Weak transcription | Thymus | Thymus |
4 | chr1:223318400-223322600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
5 | chr1:223318600-223321400 | Weak transcription | Fetal Muscle Leg | muscle |