Variant report

Variant	rs35644560
Chromosome Location	chr1:223339419-223339420
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223338258..223339818-chr1:223723873..223726307,2	MCF-7	breast:
2	chr1:223322701..223324209-chr1:223338729..223341132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203697	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11485988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11488551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1640803	0.87[EUR][1000 genomes]
rs1773753	1.00[EUR][1000 genomes]
rs2160152	0.87[EUR][1000 genomes]
rs34071437	1.00[AMR][1000 genomes]
rs35169648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227692	1.00[AMR][1000 genomes]
rs35412940	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35551279	1.00[AMR][1000 genomes]
rs35778136	1.00[AMR][1000 genomes]
rs5744122	1.00[AMR][1000 genomes]
rs712862	0.87[EUR][1000 genomes]
rs73118152	1.00[AMR][1000 genomes]
rs73118166	0.87[EUR][1000 genomes]
rs73118168	0.87[EUR][1000 genomes]
rs73118170	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73118175	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73118176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118186	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118187	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118190	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118194	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118198	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118201	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118202	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120203	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120206	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73120207	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120214	1.00[AMR][1000 genomes]
rs73120219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120222	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73120224	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73120234	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73120236	1.00[AMR][1000 genomes]
rs73120250	1.00[AMR][1000 genomes]
rs73120257	1.00[AMR][1000 genomes]
rs73120261	1.00[AMR][1000 genomes]
rs73120265	1.00[AMR][1000 genomes]
rs73120297	1.00[AMR][1000 genomes]
rs851140	0.87[EUR][1000 genomes]
rs851144	0.87[EUR][1000 genomes]
rs851146	0.87[EUR][1000 genomes]
rs851147	0.87[EUR][1000 genomes]
rs851151	0.87[EUR][1000 genomes]
rs851156	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223338600-223341800	Enhancers	Placenta	Placenta
2	chr1:223338800-223339600	Enhancers	Esophagus	oesophagus

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