Variant report

Variant	rs988779
Chromosome Location	chr1:223328220-223328221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223316496..223318178-chr1:223325996..223328231,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction
ENSG00000236846	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10489492	0.95[ASN][1000 genomes]
rs11486079	1.00[ASN][1000 genomes]
rs1341985	1.00[EUR][1000 genomes]
rs1361642	0.93[ASN][1000 genomes]
rs1418143	1.00[EUR][1000 genomes]
rs1418144	1.00[EUR][1000 genomes]
rs1418145	0.84[ASN][1000 genomes]
rs1418146	0.84[ASN][1000 genomes]
rs1612398	1.00[ASN][1000 genomes]
rs1640803	0.98[ASN][1000 genomes]
rs1640809	0.95[ASN][1000 genomes]
rs1640811	0.95[ASN][1000 genomes]
rs1640812	0.95[ASN][1000 genomes]
rs1640813	0.95[ASN][1000 genomes]
rs1640814	0.95[ASN][1000 genomes]
rs1640815	0.95[ASN][1000 genomes]
rs1640816	0.93[ASN][1000 genomes]
rs1640817	0.93[ASN][1000 genomes]
rs1640818	0.93[ASN][1000 genomes]
rs1640819	0.93[ASN][1000 genomes]
rs1640820	0.91[ASN][1000 genomes]
rs1640823	0.93[ASN][1000 genomes]
rs17163743	1.00[ASN][1000 genomes]
rs1773738	0.95[ASN][1000 genomes]
rs1773744	0.95[ASN][1000 genomes]
rs1773749	1.00[ASN][1000 genomes]
rs1773753	0.98[ASN][1000 genomes]
rs1773754	1.00[ASN][1000 genomes]
rs1773761	0.95[ASN][1000 genomes]
rs1773762	0.95[ASN][1000 genomes]
rs1773763	0.95[ASN][1000 genomes]
rs1773765	0.95[ASN][1000 genomes]
rs1773766	0.93[ASN][1000 genomes]
rs1773767	0.93[ASN][1000 genomes]
rs1773768	0.93[ASN][1000 genomes]
rs1935305	0.95[ASN][1000 genomes]
rs2256707	0.95[ASN][1000 genomes]
rs2302597	0.91[ASN][1000 genomes]
rs2353474	0.93[ASN][1000 genomes]
rs2430400	0.95[ASN][1000 genomes]
rs2487834	0.95[ASN][1000 genomes]
rs2487836	0.95[ASN][1000 genomes]
rs34088950	1.00[EUR][1000 genomes]
rs34136554	0.95[ASN][1000 genomes]
rs34552707	1.00[ASN][1000 genomes]
rs35579200	1.00[ASN][1000 genomes]
rs5744104	1.00[EUR][1000 genomes]
rs5744106	1.00[EUR][1000 genomes]
rs5744107	1.00[EUR][1000 genomes]
rs5744144	0.90[EUR][1000 genomes]
rs5744150	0.90[EUR][1000 genomes]
rs5744156	0.90[EUR][1000 genomes]
rs66553000	1.00[ASN][1000 genomes]
rs66662427	0.95[ASN][1000 genomes]
rs66757010	0.95[ASN][1000 genomes]
rs66832195	0.95[ASN][1000 genomes]
rs66938974	1.00[ASN][1000 genomes]
rs67573944	0.95[ASN][1000 genomes]
rs67623966	1.00[ASN][1000 genomes]
rs67639934	1.00[ASN][1000 genomes]
rs67883821	1.00[ASN][1000 genomes]
rs723961	0.95[ASN][1000 genomes]
rs72743840	1.00[EUR][1000 genomes]
rs72743847	1.00[EUR][1000 genomes]
rs72743851	0.95[ASN][1000 genomes]
rs72743852	0.93[ASN][1000 genomes]
rs72743860	1.00[EUR][1000 genomes]
rs72743869	1.00[EUR][1000 genomes]
rs72743871	1.00[EUR][1000 genomes]
rs72743874	1.00[EUR][1000 genomes]
rs72748469	0.86[EUR][1000 genomes]
rs72748471	0.86[EUR][1000 genomes]
rs72748472	0.86[EUR][1000 genomes]
rs72748475	0.86[EUR][1000 genomes]
rs72748482	0.90[EUR][1000 genomes]
rs73118159	1.00[ASN][1000 genomes]
rs73118168	0.98[ASN][1000 genomes]
rs759303	0.95[ASN][1000 genomes]
rs988241	1.00[ASN][1000 genomes]
rs988242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223325600-223329000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:223326800-223329200	Enhancers	Placenta	Placenta
3	chr1:223327200-223334600	Weak transcription	Fetal Thymus	thymus

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