Variant report

Variant	rs763389
Chromosome Location	chr1:223312089-223312090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223311533..223314395-chr1:223314636..223318058,5	K562	blood:
2	chr1:223295440..223297086-chr1:223310909..223313590,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187554	Chromatin interaction
ENSG00000236846	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10489492	0.84[ASN][1000 genomes]
rs11486079	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11488549	0.80[AMR][1000 genomes]
rs1361642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1418145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1612398	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1640809	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1640811	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1640812	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1640813	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1640814	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1640815	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1640816	0.81[ASN][1000 genomes]
rs1640817	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1640818	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1640819	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1640820	0.84[ASN][1000 genomes]
rs1640823	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17163741	0.80[AMR][1000 genomes]
rs17163742	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17163743	0.91[AMR][1000 genomes]
rs1773738	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773744	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773749	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1773754	0.83[EUR][1000 genomes]
rs1773761	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773762	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773763	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773765	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1773766	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1773767	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1773768	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1935305	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2241095	0.97[ASN][1000 genomes]
rs2256707	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2302597	0.84[ASN][1000 genomes]
rs2353474	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2430400	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2487834	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2487836	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34136554	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34552707	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34970812	0.83[EUR][1000 genomes]
rs35349967	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35579200	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35705006	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35802580	0.80[AMR][1000 genomes]
rs35953839	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4393150	0.80[AMR][1000 genomes]
rs45501199	0.97[ASN][1000 genomes]
rs5744135	0.97[ASN][1000 genomes]
rs5744138	0.97[ASN][1000 genomes]
rs5744139	0.97[ASN][1000 genomes]
rs5744140	0.97[ASN][1000 genomes]
rs5744143	0.97[ASN][1000 genomes]
rs5744145	0.97[ASN][1000 genomes]
rs5744147	0.97[ASN][1000 genomes]
rs5744149	0.97[ASN][1000 genomes]
rs5744156	0.85[ASN][1000 genomes]
rs66553000	0.91[AMR][1000 genomes]
rs66662427	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66757010	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66832195	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66938974	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67573944	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67623966	0.83[EUR][1000 genomes]
rs67639934	0.91[AMR][1000 genomes]
rs67833495	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67883821	0.83[EUR][1000 genomes]
rs723961	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72743851	0.84[ASN][1000 genomes]
rs72743852	0.82[ASN][1000 genomes]
rs73118159	0.83[EUR][1000 genomes]
rs759303	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs988241	0.91[AMR][1000 genomes]
rs988242	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs988243	0.80[AMR][1000 genomes]
rs988244	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223303200-223314600	Weak transcription	Spleen	Spleen
2	chr1:223307600-223314200	Weak transcription	Right Ventricle	heart
3	chr1:223307600-223315800	Weak transcription	Right Atrium	heart
4	chr1:223307800-223312600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:223308600-223314000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:223308800-223314000	Weak transcription	Gastric	stomach
7	chr1:223308800-223314000	Weak transcription	Pancreas	Pancrea
8	chr1:223308800-223314000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:223308800-223314400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:223308800-223314600	Weak transcription	Colonic Mucosa	Colon
11	chr1:223309000-223314200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:223309200-223315800	Weak transcription	Primary T cells from cord blood	blood
13	chr1:223309400-223316000	Weak transcription	NHLF	lung
14	chr1:223309600-223314600	Weak transcription	Ovary	ovary
15	chr1:223309600-223314600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:223309800-223313000	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:223309800-223313600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:223309800-223314000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:223309800-223315600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:223310200-223316000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:223310600-223314000	Weak transcription	Esophagus	oesophagus
22	chr1:223310600-223314000	Weak transcription	Psoas Muscle	Psoas
23	chr1:223310600-223314200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:223310600-223315400	Weak transcription	Lung	lung
25	chr1:223311000-223314200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:223311200-223314000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr1:223311200-223314000	Weak transcription	NHDF-Ad	bronchial
28	chr1:223311200-223314200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:223311200-223314200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:223311200-223314400	Weak transcription	HMEC	breast
31	chr1:223311200-223314400	Weak transcription	NHEK	skin
32	chr1:223311200-223314600	Weak transcription	Stomach Mucosa	stomach
33	chr1:223311200-223315800	Weak transcription	Hela-S3	cervix
34	chr1:223311200-223316000	Weak transcription	Liver	Liver
35	chr1:223311400-223314200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:223311400-223314200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:223311400-223316000	Weak transcription	Fetal Intestine Large	intestine
38	chr1:223311600-223312600	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr1:223311600-223313000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr1:223311600-223313800	Weak transcription	Placenta	Placenta
41	chr1:223311600-223313800	Weak transcription	Fetal Thymus	thymus
42	chr1:223311600-223314000	Weak transcription	Adipose Nuclei	Adipose
43	chr1:223311600-223314000	Weak transcription	Brain Anterior Caudate	brain
44	chr1:223311600-223314000	Weak transcription	Fetal Lung	lung
45	chr1:223311600-223314200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:223311600-223315600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr1:223311600-223316000	Weak transcription	Fetal Intestine Small	intestine
48	chr1:223311600-223316200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr1:223311800-223312200	Enhancers	Primary B cells from cord blood	blood
50	chr1:223312000-223314000	Weak transcription	Fetal Stomach	stomach

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