Variant report

Variant	rs3121732
Chromosome Location	chr1:45720886-45720887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45696772..45699429-chr1:45718922..45721450,2	K562	blood:
2	chr1:45713616..45716854-chr1:45720214..45722890,3	K562	blood:
3	chr1:45716599..45723837-chr1:45726714..45733883,8	K562	blood:

Variant related genes	Relation type
ENSG00000221707	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11211074	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1144868	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11802089	0.96[ASN][1000 genomes]
rs1226747	0.91[JPT][hapmap]
rs1226914	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13374935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1938296	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1938300	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1938301	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1938304	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1938407	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105458	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2186219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2356302	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs238249	0.96[CEU][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2997458	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2997461	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2997465	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3009968	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3009969	0.96[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3009974	1.00[CEU][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3009979	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3121736	0.84[EUR][1000 genomes]
rs3121769	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3128438	0.88[EUR][1000 genomes]
rs3128439	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3128440	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34134455	0.91[JPT][hapmap]
rs346684	0.89[JPT][hapmap]
rs346687	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs346693	0.91[JPT][hapmap]
rs346696	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs346701	0.81[EUR][1000 genomes]
rs346706	0.91[JPT][hapmap]
rs346707	0.91[JPT][hapmap]
rs346717	0.91[JPT][hapmap]
rs346719	0.91[JPT][hapmap]
rs346723	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs346724	0.91[JPT][hapmap]
rs346731	0.84[AFR][1000 genomes]
rs346732	0.91[JPT][hapmap]
rs346733	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs346736	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs346737	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs365108	0.91[JPT][hapmap]
rs3850855	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs3850856	0.91[JPT][hapmap]
rs415536	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4233496	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4233497	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4376777	0.85[EUR][1000 genomes]
rs4454584	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs454624	0.91[JPT][hapmap]
rs4603171	0.80[ASN][1000 genomes]
rs4660839	1.00[JPT][hapmap]
rs4660841	0.91[JPT][hapmap]
rs4660842	0.91[JPT][hapmap]
rs55932948	0.97[ASN][1000 genomes]
rs56086213	0.97[ASN][1000 genomes]
rs57754814	0.97[ASN][1000 genomes]
rs61003126	0.94[ASN][1000 genomes]
rs61789815	0.90[ASN][1000 genomes]
rs61789823	0.80[ASN][1000 genomes]
rs6429557	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs6429561	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6429562	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6429563	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6702327	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
4	nsv998187	chr1:45677251-45732377	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45713600-45723800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:45719800-45721000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:45720200-45721000	Enhancers	HepG2	liver

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