Variant report

Variant	rs11802089
Chromosome Location	chr1:45728686-45728687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45716599..45723837-chr1:45726714..45733883,8	K562	blood:
2	chr1:45717171..45719961-chr1:45727838..45729738,2	MCF-7	breast:
3	chr1:45722680..45725853-chr1:45727060..45729598,3	K562	blood:
4	chr1:45728448..45730333-chr1:45735366..45738285,2	MCF-7	breast:
5	chr1:45724453..45726184-chr1:45728358..45730973,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11806438	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11810239	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1226670	0.81[EUR][1000 genomes]
rs13374935	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1938296	0.81[ASN][1000 genomes]
rs1938303	0.83[EUR][1000 genomes]
rs1938407	1.00[ASN][1000 genomes]
rs2186219	0.92[ASN][1000 genomes]
rs2997458	0.97[ASN][1000 genomes]
rs3121732	0.96[ASN][1000 genomes]
rs3121769	0.97[ASN][1000 genomes]
rs3128439	0.81[ASN][1000 genomes]
rs3128440	0.81[ASN][1000 genomes]
rs34134455	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs346693	0.81[EUR][1000 genomes]
rs346695	0.81[EUR][1000 genomes]
rs346700	0.81[EUR][1000 genomes]
rs346712	0.81[EUR][1000 genomes]
rs346716	0.81[EUR][1000 genomes]
rs346717	0.81[EUR][1000 genomes]
rs346719	0.81[EUR][1000 genomes]
rs346721	0.81[EUR][1000 genomes]
rs346724	0.81[EUR][1000 genomes]
rs346732	0.81[EUR][1000 genomes]
rs346734	0.81[EUR][1000 genomes]
rs3850856	0.83[EUR][1000 genomes]
rs4376776	0.85[EUR][1000 genomes]
rs454624	0.81[EUR][1000 genomes]
rs4603171	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4660295	0.81[EUR][1000 genomes]
rs4660839	0.81[EUR][1000 genomes]
rs4660841	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55932948	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56086213	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56791336	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57754814	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58374842	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58579477	0.83[EUR][1000 genomes]
rs58934647	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60115828	0.83[EUR][1000 genomes]
rs61003126	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61789780	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61789781	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61789815	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61789823	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61789838	0.83[EUR][1000 genomes]
rs72684493	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
4	nsv998187	chr1:45677251-45732377	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45726200-45731600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:45726800-45728800	Weak transcription	HUVEC	blood vessel
3	chr1:45727000-45731200	Weak transcription	HepG2	liver
4	chr1:45728000-45731600	Weak transcription	NHLF	lung
5	chr1:45728200-45731800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:45728200-45731800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links