Variant report

Variant	rs61789838
Chromosome Location	chr1:45756979-45756980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45756933..45758729-chr1:45768463..45770390,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11802089	0.83[EUR][1000 genomes]
rs11806438	0.82[EUR][1000 genomes]
rs11810239	0.86[EUR][1000 genomes]
rs13374935	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1938296	0.94[ASN][1000 genomes]
rs1938303	0.82[EUR][1000 genomes]
rs2186219	0.84[ASN][1000 genomes]
rs3121736	0.94[ASN][1000 genomes]
rs3128438	0.89[ASN][1000 genomes]
rs3128439	0.94[ASN][1000 genomes]
rs3128440	0.94[ASN][1000 genomes]
rs3850856	0.82[EUR][1000 genomes]
rs4233496	0.97[ASN][1000 genomes]
rs4233497	0.97[ASN][1000 genomes]
rs4376776	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376777	0.93[ASN][1000 genomes]
rs4603171	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55932948	0.89[EUR][1000 genomes]
rs56086213	0.89[EUR][1000 genomes]
rs56791336	0.87[EUR][1000 genomes]
rs57477133	0.81[AFR][1000 genomes]
rs57754814	0.89[EUR][1000 genomes]
rs58374842	0.82[EUR][1000 genomes]
rs58579477	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60115828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61003126	0.89[EUR][1000 genomes]
rs61789780	0.82[EUR][1000 genomes]
rs61789781	0.82[EUR][1000 genomes]
rs61789815	0.90[EUR][1000 genomes]
rs61789823	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61789841	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6429561	0.97[ASN][1000 genomes]
rs6429562	0.97[ASN][1000 genomes]
rs6429563	0.97[ASN][1000 genomes]
rs72686420	0.84[AFR][1000 genomes]
rs72686440	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
2	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
3	nsv1014509	chr1:45687523-45887501	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv997548	chr1:45733596-45955845	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv534942	chr1:45733596-45955845	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv3406025	chr1:45739908-45763848	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv482356	chr1:45750459-45915545	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45756800-45757800	Enhancers	K562	blood
2	chr1:45756800-45758600	Enhancers	Fetal Intestine Large	intestine
3	chr1:45756800-45759000	Enhancers	Fetal Intestine Small	intestine
4	chr1:45756800-45759800	Enhancers	HepG2	liver

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